Aptamers—short, single-stranded DNA or RNA oligonucleotides that fold into target-binding structures—are attractive tools for therapeutics, diagnostics, and biosensing. But one limitation shows up again and again in real-world use: stability. In biological fluids, aptamers can be degraded by nucleases, lose their functional conformation, or get cleared rapidly due to small size. “Enhancing aptamer stability” therefore means engineering aptamers to retain integrity and function under the conditions they must actually operate in—serum, cells, elevated temperatures, long storage, or repeated assay cycles. This article explains the major stability failure modes and the best-established enhancement strategies—organized the way practitioners typically make design decisions. 1) What “Aptamer Stability” Really Means (It’s Not One Thing) When people say “aptamer stability,” they often blend multiple properties: Nuclease stability (biostability): resistance to DNases/RNases in serum, plasma, and tissues. Structural/conformational stability: ability to keep the correct fold that binds the target (especially under ionic changes, crowding, or temperature shifts). Thermal stability: higher melting temperature (Tₘ) and robust folding across a wider temperature range. Circulation stability (pharmacokinetic stability): staying in the bloodstream long enough to matter—often limited by renal filtration for small oligos. Functional stability: maintaining binding affinity/specificity after modifications, storage, repeated use, or immobilization. A…
Aptamers are short, single-stranded nucleic acid molecules (DNA or RNA) that fold into specific 3D shapes and bind targets with high affinity and selectivity—often compared to how antibodies recognize antigens, but built from nucleic acids rather than proteins. Unlike a “generic DNA strand,” an aptamer’s function comes from structure: loops, stems, bulges, pseudoknots, and other motifs that create a binding surface matching a target’s geometry and chemistry. Targets can include proteins, peptides, small molecules, ions, and even whole cells (depending on the selection strategy). Why Aptamers Matter (and How They Differ From Antibodies) Aptamers are often described as “chemical antibodies,” but the differences are exactly why they’re valuable. Key advantages frequently highlighted Low immunogenicity (reduced risk of provoking immune responses) High stability and the ability to refold after denaturation in many cases Easy chemical synthesis (batch consistency, scalable manufacturing) Straightforward modification (labels, linkers, immobilization handles) Trade-offs you should know Nuclease sensitivity (especially RNA aptamers) can be a limitation in biological fluids unless stabilized. Selection bias can occur during discovery (e.g., PCR bias), meaning “best in the tube” isn’t always “best in reality.” Very high affinity does not automatically guarantee best real-world specificity; selection conditions matter. …
